J4_8K2B_003

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|G|822
8K2B|1|L1|C|823
8K2B|1|L1|C|824
8K2B|1|L1|U|825
8K2B|1|L1|G|826
*
8K2B|1|L1|C|838
8K2B|1|L1|A|839
8K2B|1|L1|U|840
8K2B|1|L1|C|841
8K2B|1|L1|A|842
8K2B|1|L1|C|843
*
8K2B|1|L1|G|867
8K2B|1|L1|C|868
8K2B|1|L1|A|869
8K2B|1|L1|C|870
8K2B|1|L1|C|871
8K2B|1|L1|G|872
*
8K2B|1|L1|C|967
8K2B|1|L1|U|968
8K2B|1|L1|C|969
8K2B|1|L1|C|970
8K2B|1|L1|A|971
8K2B|1|L1|C|972

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m