J4_8K2B_004

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8K2B|1|L1|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8K2B_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1435

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8K2B|1|L1|C|874
8K2B|1|L1|U|875
8K2B|1|L1|G|876
*
8K2B|1|L1|C|899
8K2B|1|L1|C|900
*
8K2B|1|L1|G|917
8K2B|1|L1|C|918
8K2B|1|L1|A|919
8K2B|1|L1|A|920
8K2B|1|L1|A|921
8K2B|1|L1|G|922
8K2B|1|L1|G|923
8K2B|1|L1|U|924
8K2B|1|L1|A|925
8K2B|1|L1|G|926
*
8K2B|1|L1|U|960
8K2B|1|L1|G|961
8K2B|1|L1|A|962
8K2B|1|L1|A|963
8K2B|1|L1|U|964
8K2B|1|L1|G|965

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m