J4_8K2C_005

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8K2C|1|L5|A|2366, 8K2C|1|L5|U|2369, 8K2C|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|C|2365
8K2C|1|L5|A|2366
8K2C|1|L5|A|2367
8K2C|1|L5|A|2368
8K2C|1|L5|U|2369
8K2C|1|L5|A|2370
8K2C|1|L5|U|2371
*
8K2C|1|L5|A|2389
8K2C|1|L5|G|2390
8K2C|1|L5|G|2391
*
8K2C|1|L5|C|2824
8K2C|1|L5|A|2825
8K2C|1|L5|U|2826
8K2C|1|L5|G|2827
8K2C|1|L5|U|2828
8K2C|1|L5|U|2829
*
8K2C|1|L5|A|3856
8K2C|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31