J4_8K3O_001

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8K3O|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8K3O_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2337

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8K3O|1|A|G|115
8K3O|1|A|A|116
8K3O|1|A|G|117
8K3O|1|A|U|118
8K3O|1|A|A|119
8K3O|1|A|A|120
8K3O|1|A|U|121
8K3O|1|A|G|122
*
8K3O|1|A|U|239
8K3O|1|A|G|240
*
8K3O|1|A|C|286
8K3O|1|A|U|287
8K3O|1|A|A|288
8K3O|1|A|G|289
*
8K3O|1|A|C|311
8K3O|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17