J4_8K3O_002

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8K3O|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8K3O_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.153

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8K3O|1|A|G|142
8K3O|1|A|A|143
8K3O|1|A|G|144
*
8K3O|1|A|C|178
8K3O|1|A|A|179
8K3O|1|A|U|180
8K3O|1|A|A|181
8K3O|1|A|A|182
8K3O|1|A|C|183
8K3O|1|A|G|184
*
8K3O|1|A|C|193
8K3O|1|A|C|194
8K3O|1|A|A|195
8K3O|1|A|A|196
8K3O|1|A|A|197
8K3O|1|A|G|198
*
8K3O|1|A|U|219
8K3O|1|A|G|220
8K3O|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20