J4_8K4E_001

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8K4E|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8K4E_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.23

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8K4E|1|A|G|115
8K4E|1|A|A|116
8K4E|1|A|G|117
8K4E|1|A|U|118
8K4E|1|A|A|119
8K4E|1|A|A|120
8K4E|1|A|U|121
8K4E|1|A|G|122
*
8K4E|1|A|U|239
8K4E|1|A|G|240
*
8K4E|1|A|C|286
8K4E|1|A|U|287
8K4E|1|A|A|288
8K4E|1|A|G|289
*
8K4E|1|A|C|311
8K4E|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17