J4_8K82_003
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8K82|1|C1|A|1452, 8K82|1|C1|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8K82_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.0774
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8K82|1|C1|C|1451
8K82|1|C1|A|1452
8K82|1|C1|A|1453
8K82|1|C1|A|1454
8K82|1|C1|U|1455
8K82|1|C1|A|1456
8K82|1|C1|U|1457
*
8K82|1|C1|A|1475
8K82|1|C1|G|1476
*
8K82|1|C1|U|1877
8K82|1|C1|G|1878
8K82|1|C1|A|1879
8K82|1|C1|U|1880
*
8K82|1|C1|A|2352
8K82|1|C1|G|2353
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain Ld
- Large ribosomal subunit protein eL31A
Coloring options: