J4_8K82_004
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8K82|1|C1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8K82_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0514
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8K82|1|C1|G|1492
8K82|1|C1|G|1493
8K82|1|C1|U|1494
8K82|1|C1|U|1495
8K82|1|C1|C|1496
*
8K82|1|C1|G|1520
8K82|1|C1|G|1521
8K82|1|C1|U|1522
8K82|1|C1|U|1523
8K82|1|C1|A|1524
8K82|1|C1|G|1525
*
8K82|1|C1|C|1614
8K82|1|C1|C|1615
*
8K82|1|C1|G|1829
8K82|1|C1|G|1830
8K82|1|C1|U|1831
8K82|1|C1|C|1832
8K82|1|C1|G|1833
8K82|1|C1|U|1834
8K82|1|C1|A|1835
8K82|1|C1|C|1836
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- Large ribosomal subunit protein eL41A
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: