J4_8OEQ_010
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_010 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.0577
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|U|111
8OEQ|1|AS|C|112
*
8OEQ|1|AS|G|267
8OEQ|1|AS|A|268
8OEQ|1|AS|G|269
8OEQ|1|AS|U|270
8OEQ|1|AS|C|271
8OEQ|1|AS|G|272
*
8OEQ|1|AS|C|293
8OEQ|1|AS|U|294
8OEQ|1|AS|A|295
8OEQ|1|AS|A|296
8OEQ|1|AS|G|297
8OEQ|1|AS|U|298
8OEQ|1|AS|G|299
*
8OEQ|1|AS|U|316
8OEQ|1|AS|A|317
8OEQ|1|AS|A|318
8OEQ|1|AS|A|319
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain CC
- Ribosomal protein L29
- Chain CD
- 60S ribosomal protein L36
- Chain L1
- Ribosomal protein
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