J4_8OEQ_013
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_013 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0475
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|G|1488
8OEQ|1|AS|G|1489
8OEQ|1|AS|U|1490
8OEQ|1|AS|U|1491
8OEQ|1|AS|C|1492
*
8OEQ|1|AS|G|1516
8OEQ|1|AS|G|1517
8OEQ|1|AS|U|1518
8OEQ|1|AS|U|1519
8OEQ|1|AS|A|1520
8OEQ|1|AS|G|1521
*
8OEQ|1|AS|C|1610
8OEQ|1|AS|U|1611
*
8OEQ|1|AS|A|1825
8OEQ|1|AS|G|1826
8OEQ|1|AS|U|1827
8OEQ|1|AS|C|1828
8OEQ|1|AS|G|1829
8OEQ|1|AS|U|1830
8OEQ|1|AS|A|1831
8OEQ|1|AS|C|1832
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BM
- 60S ribosomal protein L19-A
- Chain BS
- 60S ribosomal protein L25
- Chain CB
- 60S ribosomal protein L34-B
- Chain CE
- 60S ribosomal protein L37-B
- Chain CF
- 60S ribosomal protein L38
- Chain CG
- 60S ribosomal protein L39
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