J4_8OEQ_015
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_015 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0472
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|G|2108
8OEQ|1|AS|A|2109
8OEQ|1|AS|C|2110
8OEQ|1|AS|U|2111
8OEQ|1|AS|G|2112
*
8OEQ|1|AS|C|2124
8OEQ|1|AS|A|2125
8OEQ|1|AS|U|2126
8OEQ|1|AS|A|2127
8OEQ|1|AS|G|2128
*
8OEQ|1|AS|U|2164
8OEQ|1|AS|G|2165
8OEQ|1|AS|A|2166
8OEQ|1|AS|U|2167
8OEQ|1|AS|U|2168
*
8OEQ|1|AS|A|2295
8OEQ|1|AS|U|2296
8OEQ|1|AS|U|2297
8OEQ|1|AS|A|2298
8OEQ|1|AS|A|2299
8OEQ|1|AS|C|2300
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain CI
- 60S ribosomal protein L41
- Chain CK
- 60S ribosomal protein L43-A
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
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