J4_8OEQ_022
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8OEQ|1|CM|A|621, 8OEQ|1|CM|A|1011, 8OEQ|1|CM|U|1014, 8OEQ|1|CM|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_022 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.035
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OEQ|1|CM|A|620
8OEQ|1|CM|A|621
8OEQ|1|CM|G|622
*
8OEQ|1|CM|C|960
8OEQ|1|CM|G|961
8OEQ|1|CM|A|962
8OEQ|1|CM|A|963
8OEQ|1|CM|A|964
8OEQ|1|CM|G|965
*
8OEQ|1|CM|C|1006
8OEQ|1|CM|C|1007
8OEQ|1|CM|A|1008
8OEQ|1|CM|U|1009
8OEQ|1|CM|A|1010
8OEQ|1|CM|A|1011
8OEQ|1|CM|A|1012
8OEQ|1|CM|C|1013
8OEQ|1|CM|U|1014
8OEQ|1|CM|A|1015
8OEQ|1|CM|U|1016
8OEQ|1|CM|G|1017
*
8OEQ|1|CM|U|1088
8OEQ|1|CM|U|1089
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L41
- Chain CK
- 60S ribosomal protein L43-A
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
- Chain DB
- 40S ribosomal protein S14-A
- Chain DJ
- 40S ribosomal protein S22-A
- Chain DK
- Ribosomal protein S23 (S12)
- Chain DN
- 40S ribosomal protein S26
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