J4_8OH6_003
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8OH6|1|1|A|1448, 8OH6|1|1|U|1451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OH6_003 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.0443
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OH6|1|1|C|1447
8OH6|1|1|A|1448
8OH6|1|1|A|1449
8OH6|1|1|A|1450
8OH6|1|1|U|1451
8OH6|1|1|A|1452
8OH6|1|1|U|1453
*
8OH6|1|1|A|1471
8OH6|1|1|G|1472
*
8OH6|1|1|U|1873
8OH6|1|1|G|1874
8OH6|1|1|A|1875
8OH6|1|1|U|1876
*
8OH6|1|1|A|2330
8OH6|1|1|G|2331
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AE
- 60S ribosomal protein L31-B
- Chain x
- Ribosomal protein L22
- Chain z
- 60S ribosomal protein L19-A
Coloring options: