J4_8OH6_005

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OH6_005 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.0638

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|1|G|1670
8OH6|1|1|G|1671
*
8OH6|1|1|C|1689
8OH6|1|1|U|1690
*
8OH6|1|1|A|1748
8OH6|1|1|G|1749
*
8OH6|1|1|U|1768
8OH6|1|1|C|1769

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain 5

60S ribosomal protein L22-B

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38