J4_8OHD_004

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8OHD|1|5|A|2366, 8OHD|1|5|U|2369, 8OHD|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OHD|1|5|C|2365
8OHD|1|5|A|2366
8OHD|1|5|A|2367
8OHD|1|5|A|2368
8OHD|1|5|U|2369
8OHD|1|5|A|2370
8OHD|1|5|U|2371
*
8OHD|1|5|A|2389
8OHD|1|5|G|2390
8OHD|1|5|G|2391
*
8OHD|1|5|C|2824
8OHD|1|5|A|2825
8OHD|1|5|U|2826
8OHD|1|5|G|2827
8OHD|1|5|U|2828
8OHD|1|5|U|2829
*
8OHD|1|5|A|3856
8OHD|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31