3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGUUC*GGUUAG*CU*AGUCGUAC
Length
21 nucleotides
Bulged bases
8OI5|1|1|U|1519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8OI5_004 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.0391
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8OI5|1|1|G|1488
8OI5|1|1|G|1489
8OI5|1|1|U|1490
8OI5|1|1|U|1491
8OI5|1|1|C|1492
*
8OI5|1|1|G|1516
8OI5|1|1|G|1517
8OI5|1|1|U|1518
8OI5|1|1|U|1519
8OI5|1|1|A|1520
8OI5|1|1|G|1521
*
8OI5|1|1|C|1610
8OI5|1|1|U|1611
*
8OI5|1|1|A|1825
8OI5|1|1|G|1826
8OI5|1|1|U|1827
8OI5|1|1|C|1828
8OI5|1|1|G|1829
8OI5|1|1|U|1830
8OI5|1|1|A|1831
8OI5|1|1|C|1832

Current chains

Chain 1
25S

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain 8
60S ribosomal protein L25
Chain AH
60S ribosomal protein L34-B
Chain AK
60S ribosomal protein L37-B
Chain AL
60S ribosomal protein L38
Chain AM
60S ribosomal protein L39
Chain z
60S ribosomal protein L19-A

Coloring options:


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