J4_8OI5_006

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OI5_006 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.0411

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|1|G|2108
8OI5|1|1|A|2109
8OI5|1|1|C|2110
8OI5|1|1|U|2111
8OI5|1|1|G|2112
*
8OI5|1|1|C|2124
8OI5|1|1|A|2125
8OI5|1|1|U|2126
8OI5|1|1|A|2127
8OI5|1|1|G|2128
*
8OI5|1|1|U|2164
8OI5|1|1|G|2165
8OI5|1|1|A|2166
8OI5|1|1|U|2167
8OI5|1|1|U|2168
*
8OI5|1|1|A|2295
8OI5|1|1|U|2296
8OI5|1|1|U|2297
8OI5|1|1|A|2298
8OI5|1|1|A|2299
8OI5|1|1|C|2300

Current chains

Chain 1

25S

Nearby chains

Chain AO

60S ribosomal protein L41

Chain AQ

60S ribosomal protein L43-A

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain j

60S ribosomal protein L2-B