J4_8OI5_011

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OI5_011 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.0554

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|AS|C|184
8OI5|1|AS|U|185
8OI5|1|AS|A|186
8OI5|1|AS|U|187
8OI5|1|AS|G|188
*
8OI5|1|AS|C|204
8OI5|1|AS|G|205
8OI5|1|AS|U|206
8OI5|1|AS|C|207
*
8OI5|1|AS|G|211
8OI5|1|AS|A|212
8OI5|1|AS|G|213
*
8OI5|1|AS|C|225
8OI5|1|AS|G|226
8OI5|1|AS|U|227
8OI5|1|AS|G|228
8OI5|1|AS|C|229
8OI5|1|AS|G|230

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24