J4_8OI5_017

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

8OI5|1|AS|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OI5_017 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.0529

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|AS|C|2626
8OI5|1|AS|U|2627
8OI5|1|AS|A|2628
8OI5|1|AS|A|2629
8OI5|1|AS|G|2630
*
8OI5|1|AS|U|2684
8OI5|1|AS|U|2685
8OI5|1|AS|G|2686
8OI5|1|AS|A|2687
8OI5|1|AS|U|2688
*
8OI5|1|AS|A|2712
8OI5|1|AS|C|2713
8OI5|1|AS|C|2714
*
8OI5|1|AS|G|2723
8OI5|1|AS|U|2724
8OI5|1|AS|G|2725

Current chains

Chain AS

25S

Nearby chains

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BO

60S ribosomal protein L21-A

Chain BW

60S ribosomal protein L29

Chain CJ

60S ribosomal protein L42-B