J4_8OIN_003
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAG*CGAUAGC*GCCCUAAACCCAAA*UUC
- Length
- 27 nucleotides
- Bulged bases
- 8OIN|1|AA|A|297, 8OIN|1|AA|A|455, 8OIN|1|AA|C|458, 8OIN|1|AA|A|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIN|1|AA|G|296
8OIN|1|AA|A|297
8OIN|1|AA|G|298
*
8OIN|1|AA|C|404
8OIN|1|AA|G|405
8OIN|1|AA|A|406
8OIN|1|AA|U|407
8OIN|1|AA|A|408
8OIN|1|AA|G|409
8OIN|1|AA|C|410
*
8OIN|1|AA|G|449
8OIN|1|AA|C|450
8OIN|1|AA|C|451
8OIN|1|AA|C|452
8OIN|1|AA|U|453
8OIN|1|AA|A|454
8OIN|1|AA|A|455
8OIN|1|AA|A|456
8OIN|1|AA|C|457
8OIN|1|AA|C|458
8OIN|1|AA|C|459
8OIN|1|AA|A|460
8OIN|1|AA|A|461
8OIN|1|AA|A|462
*
8OIN|1|AA|U|482
8OIN|1|AA|U|483
8OIN|1|AA|C|484
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A interacting protein 1
- Chain AJ
- Mitochondrial ribosomal protein S12
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- uS17m
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain AT
- Mitochondrial ribosomal protein S25
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain containing 1
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: