J4_8OIN_006

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACGCUUACA*UAAUUAAC*GUUAACC*GAG

Length

28 nucleotides

Bulged bases

8OIN|1|B8|U|705, 8OIN|1|B8|A|707, 8OIN|1|B8|A|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|B8|C|669
8OIN|1|B8|A|670
8OIN|1|B8|C|671
8OIN|1|B8|G|672
8OIN|1|B8|C|673
8OIN|1|B8|U|674
8OIN|1|B8|U|675
8OIN|1|B8|A|676
8OIN|1|B8|C|677
8OIN|1|B8|A|678
*
8OIN|1|B8|U|701
8OIN|1|B8|A|702
8OIN|1|B8|A|703
8OIN|1|B8|U|704
8OIN|1|B8|U|705
8OIN|1|B8|A|706
8OIN|1|B8|A|707
8OIN|1|B8|C|708
*
8OIN|1|B8|G|753
8OIN|1|B8|U|754
8OIN|1|B8|U|755
8OIN|1|B8|A|756
8OIN|1|B8|A|757
8OIN|1|B8|C|758
8OIN|1|B8|C|759
*
8OIN|1|B8|G|768
8OIN|1|B8|A|769
8OIN|1|B8|G|770

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BB

39S ribosomal protein L23, mitochondrial

Chain BF

Mitochondrial ribosomal protein L47

Chain BJ

Mitochondrial ribosomal protein L34

Chain Bi

39S ribosomal protein S30, mitochondrial

Chain Bq

Mitochondrial ribosomal protein L41