J4_8OIN_007

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|B8|G|824
8OIN|1|B8|C|825
8OIN|1|B8|C|826
8OIN|1|B8|U|827
8OIN|1|B8|G|828
*
8OIN|1|B8|C|840
8OIN|1|B8|A|841
8OIN|1|B8|U|842
8OIN|1|B8|C|843
8OIN|1|B8|A|844
8OIN|1|B8|C|845
*
8OIN|1|B8|G|869
8OIN|1|B8|C|870
8OIN|1|B8|A|871
8OIN|1|B8|A|872
8OIN|1|B8|U|873
8OIN|1|B8|G|874
*
8OIN|1|B8|C|969
8OIN|1|B8|C|970
8OIN|1|B8|A|971
8OIN|1|B8|C|972
8OIN|1|B8|A|973
8OIN|1|B8|C|974

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Aurora kinase A interacting protein 1

Chain BL

uL2m