J4_8OIN_008

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8OIN|1|B8|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OIN_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1517

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8OIN|1|B8|C|876
8OIN|1|B8|U|877
8OIN|1|B8|G|878
*
8OIN|1|B8|C|901
8OIN|1|B8|C|902
*
8OIN|1|B8|G|919
8OIN|1|B8|C|920
8OIN|1|B8|A|921
8OIN|1|B8|A|922
8OIN|1|B8|A|923
8OIN|1|B8|G|924
8OIN|1|B8|G|925
8OIN|1|B8|U|926
8OIN|1|B8|A|927
8OIN|1|B8|G|928
*
8OIN|1|B8|U|962
8OIN|1|B8|G|963
8OIN|1|B8|A|964
8OIN|1|B8|A|965
8OIN|1|B8|U|966
8OIN|1|B8|G|967

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Aurora kinase A interacting protein 1

Chain AG

P-site Met-tRNA(fMet)

Chain BL

uL2m