J4_8OIR_002

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUUCAC*GACA*UAG*CC

Length

17 nucleotides

Bulged bases

8OIR|1|AA|C|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIR|1|AA|G|70
8OIR|1|AA|A|71
8OIR|1|AA|G|72
8OIR|1|AA|U|73
8OIR|1|AA|U|74
8OIR|1|AA|C|75
8OIR|1|AA|A|76
8OIR|1|AA|C|77
*
8OIR|1|AA|G|103
8OIR|1|AA|A|104
8OIR|1|AA|C|105
8OIR|1|AA|A|106
*
8OIR|1|AA|U|142
8OIR|1|AA|A|143
8OIR|1|AA|G|144
*
8OIR|1|AA|C|150
8OIR|1|AA|C|151

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial

Chain Aj

28S ribosomal protein S34, mitochondrial