J4_8OIR_003
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 8OIR|1|AA|A|295, 8OIR|1|AA|A|456, 8OIR|1|AA|C|459, 8OIR|1|AA|C|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OIR_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2108
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OIR|1|AA|G|294
8OIR|1|AA|A|295
8OIR|1|AA|G|296
*
8OIR|1|AA|C|405
8OIR|1|AA|A|406
8OIR|1|AA|A|407
8OIR|1|AA|U|408
8OIR|1|AA|A|409
8OIR|1|AA|G|410
*
8OIR|1|AA|C|451
8OIR|1|AA|C|452
8OIR|1|AA|C|453
8OIR|1|AA|U|454
8OIR|1|AA|A|455
8OIR|1|AA|A|456
8OIR|1|AA|A|457
8OIR|1|AA|C|458
8OIR|1|AA|C|459
8OIR|1|AA|U|460
8OIR|1|AA|C|461
8OIR|1|AA|A|462
*
8OIR|1|AA|U|485
8OIR|1|AA|C|486
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A-interacting protein
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain AT
- 28S ribosomal protein S25, mitochondrial
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Coloring options: