J4_8OIR_004
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCA*UA(PSU)*AAAAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 8OIR|1|AG|U|8, 8OIR|1|AG|U|44
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|AG|G|7
8OIR|1|AG|U|8
8OIR|1|AG|C|9
8OIR|1|AG|A|10
*
8OIR|1|AG|U|22
8OIR|1|AG|A|23
8OIR|1|AG|PSU|24
*
8OIR|1|AG|A|40
8OIR|1|AG|A|41
8OIR|1|AG|A|42
8OIR|1|AG|A|43
8OIR|1|AG|U|44
8OIR|1|AG|G|45
*
8OIR|1|AG|C|60
8OIR|1|AG|C|61
Current chains
- Chain AG
- P-site Met-tRNA(Met)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain Bp
- 39S ribosomal protein L40, mitochondrial
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
Coloring options: