J4_8OIR_006

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAGCCUGCG*CAAUUAAC*GUCAACC*GCA

Length

28 nucleotides

Bulged bases

8OIR|1|B8|U|702, 8OIR|1|B8|A|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIR|1|B8|U|666
8OIR|1|B8|A|667
8OIR|1|B8|A|668
8OIR|1|B8|G|669
8OIR|1|B8|C|670
8OIR|1|B8|C|671
8OIR|1|B8|U|672
8OIR|1|B8|G|673
8OIR|1|B8|C|674
8OIR|1|B8|G|675
*
8OIR|1|B8|C|698
8OIR|1|B8|A|699
8OIR|1|B8|A|700
8OIR|1|B8|U|701
8OIR|1|B8|U|702
8OIR|1|B8|A|703
8OIR|1|B8|A|704
8OIR|1|B8|C|705
*
8OIR|1|B8|G|751
8OIR|1|B8|U|752
8OIR|1|B8|C|753
8OIR|1|B8|A|754
8OIR|1|B8|A|755
8OIR|1|B8|C|756
8OIR|1|B8|C|757
*
8OIR|1|B8|G|766
8OIR|1|B8|C|767
8OIR|1|B8|A|768

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BB

39S ribosomal protein L23, mitochondrial

Chain BF

39S ribosomal protein L47, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain Bi

39S ribosomal protein S30, mitochondrial

Chain Bq

39S ribosomal protein L41, mitochondrial