J4_8OIR_007

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIR|1|B8|G|822
8OIR|1|B8|C|823
8OIR|1|B8|C|824
8OIR|1|B8|U|825
8OIR|1|B8|G|826
*
8OIR|1|B8|C|838
8OIR|1|B8|A|839
8OIR|1|B8|U|840
8OIR|1|B8|C|841
8OIR|1|B8|A|842
8OIR|1|B8|C|843
*
8OIR|1|B8|G|867
8OIR|1|B8|C|868
8OIR|1|B8|A|869
8OIR|1|B8|C|870
8OIR|1|B8|C|871
8OIR|1|B8|G|872
*
8OIR|1|B8|C|967
8OIR|1|B8|U|968
8OIR|1|B8|C|969
8OIR|1|B8|C|970
8OIR|1|B8|A|971
8OIR|1|B8|C|972

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Aurora kinase A-interacting protein

Chain BL

39S ribosomal protein L2, mitochondrial