J4_8OIR_008
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8OIR|1|B8|U|964
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OIR_008 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.1472
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OIR|1|B8|C|874
8OIR|1|B8|U|875
8OIR|1|B8|G|876
*
8OIR|1|B8|C|899
8OIR|1|B8|C|900
*
8OIR|1|B8|G|917
8OIR|1|B8|C|918
8OIR|1|B8|A|919
8OIR|1|B8|A|920
8OIR|1|B8|A|921
8OIR|1|B8|G|922
8OIR|1|B8|G|923
8OIR|1|B8|U|924
8OIR|1|B8|A|925
8OIR|1|B8|G|926
*
8OIR|1|B8|U|960
8OIR|1|B8|G|961
8OIR|1|B8|A|962
8OIR|1|B8|A|963
8OIR|1|B8|U|964
8OIR|1|B8|G|965
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- Aurora kinase A-interacting protein
- Chain AG
- P-site Met-tRNA(Met)
- Chain BL
- 39S ribosomal protein L2, mitochondrial
Coloring options: