J4_8OIR_009

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAA*UA*UCCCCCGU*AGUAUUAU

Length

21 nucleotides

Bulged bases

8OIR|1|B8|C|1498, 8OIR|1|B8|A|1528, 8OIR|1|B8|U|1529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIR|1|B8|A|1441
8OIR|1|B8|A|1442
8OIR|1|B8|A|1443
*
8OIR|1|B8|U|1473
8OIR|1|B8|A|1474
*
8OIR|1|B8|U|1497
8OIR|1|B8|C|1498
8OIR|1|B8|C|1499
8OIR|1|B8|C|1500
8OIR|1|B8|C|1501
8OIR|1|B8|C|1502
8OIR|1|B8|G|1503
8OIR|1|B8|U|1504
*
8OIR|1|B8|A|1525
8OIR|1|B8|G|1526
8OIR|1|B8|U|1527
8OIR|1|B8|A|1528
8OIR|1|B8|U|1529
8OIR|1|B8|U|1530
8OIR|1|B8|A|1531
8OIR|1|B8|U|1532

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BR

39S ribosomal protein L13, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain Bh

39S ribosomal protein S18a, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial