J4_8OIR_010
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GU(1MA)(2MG)*CAC*GAGAUUU*ACC
- Length
- 17 nucleotides
- Bulged bases
- 8OIR|1|B9|U|8, 8OIR|1|B9|U|45
- QA status
- Modified nucleotides: 1MA, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B9|G|7
8OIR|1|B9|U|8
8OIR|1|B9|1MA|9
8OIR|1|B9|2MG|10
*
8OIR|1|B9|C|23
8OIR|1|B9|A|24
8OIR|1|B9|C|25
*
8OIR|1|B9|G|41
8OIR|1|B9|A|42
8OIR|1|B9|G|43
8OIR|1|B9|A|44
8OIR|1|B9|U|45
8OIR|1|B9|U|46
8OIR|1|B9|U|47
*
8OIR|1|B9|A|60
8OIR|1|B9|C|61
8OIR|1|B9|C|62
Current chains
- Chain B9
- CP Val-tRNA(Val)
Nearby chains
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BW
- 39S ribosomal protein L18, mitochondrial
- Chain Bn
- 39S ribosomal protein L38, mitochondrial
- Chain Bp
- 39S ribosomal protein L40, mitochondrial
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
Coloring options: