Loop J4_8OIS

General information

3D structure

PDB id: 8OIS (explore in PDB, NAKB, or RNA 3D Hub)
Description: 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: GAG*CAAUAG*CCCUAAACCUCA*UC
Length: 23 nucleotides
Bulged bases: 8OIS|1|AA|A|295, 8OIS|1|AA|A|456, 8OIS|1|AA|C|459, 8OIS|1|AA|C|461
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

J4_8OIS_003 not in the Motif Atlas
Homologous match to J4_5J7L_003: Geometric discrepancy: 0.2106; The information below is about J4_5J7L_003
Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J4_61885.6
Basepair signature: cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group: 4

Unit IDs

8OIS|1|AA|G|294
8OIS|1|AA|A|295
8OIS|1|AA|G|296
*
8OIS|1|AA|C|405
8OIS|1|AA|A|406
8OIS|1|AA|A|407
8OIS|1|AA|U|408
8OIS|1|AA|A|409
8OIS|1|AA|G|410
*
8OIS|1|AA|C|451
8OIS|1|AA|C|452
8OIS|1|AA|C|453
8OIS|1|AA|U|454
8OIS|1|AA|A|455
8OIS|1|AA|A|456
8OIS|1|AA|A|457
8OIS|1|AA|C|458
8OIS|1|AA|C|459
8OIS|1|AA|U|460
8OIS|1|AA|C|461
8OIS|1|AA|A|462
*
8OIS|1|AA|U|485
8OIS|1|AA|C|486

Current chains

Chain AA: 12S rRNA

Nearby chains

Chain AD: Aurora kinase A-interacting protein
Chain AJ: 28S ribosomal protein S12, mitochondrial
Chain AL: 28S ribosomal protein S15, mitochondrial
Chain AN: 28S ribosomal protein S17, mitochondrial
Chain AQ: 28S ribosomal protein S21, mitochondrial
Chain AT: 28S ribosomal protein S25, mitochondrial
Chain Ac: Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Coloring options:
Nucleotide numbers

J4_8OIS_003
J4_5J7L_003 (superposition may be poor)