J4_8OJ5_008
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8OJ5|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OJ5_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1174
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OJ5|1|5|C|3696
8OJ5|1|5|U|3697
8OJ5|1|5|G|3698
*
8OJ5|1|5|C|3752
8OJ5|1|5|G|3753
*
8OJ5|1|5|C|3771
8OJ5|1|5|U|3772
8OJ5|1|5|U|3773
8OJ5|1|5|A|3774
8OJ5|1|5|A|3775
8OJ5|1|5|G|3776
8OJ5|1|5|G|3777
8OJ5|1|5|U|3778
8OJ5|1|5|A|3779
8OJ5|1|5|G|3780
*
8OJ5|1|5|U|3814
8OJ5|1|5|G|3815
8OJ5|1|5|A|3816
8OJ5|1|5|A|3817
8OJ5|1|5|U|3818
8OJ5|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- E3 UFM1-protein ligase 1
- Chain LA
- 60S ribosomal protein L8
Coloring options: