J4_8OJ5_009

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8OJ5|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ5|1|5|C|4231
8OJ5|1|5|U|4232
8OJ5|1|5|A|4233
8OJ5|1|5|A|4234
8OJ5|1|5|G|4235
*
8OJ5|1|5|U|4289
8OJ5|1|5|U|4290
8OJ5|1|5|G|4291
*
8OJ5|1|5|C|4318
8OJ5|1|5|C|4319
*
8OJ5|1|5|G|4328
8OJ5|1|5|G|4329
8OJ5|1|5|G|4330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a