J4_8OO0_006
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OO0_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1221
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OO0|1|1|G|2093
8OO0|1|1|A|2094
8OO0|1|1|C|2095
8OO0|1|1|U|2096
8OO0|1|1|G|2097
*
8OO0|1|1|C|2109
8OO0|1|1|A|2110
8OO0|1|1|U|2111
8OO0|1|1|A|2112
8OO0|1|1|G|2113
*
8OO0|1|1|U|2149
8OO0|1|1|G|2150
8OO0|1|1|A|2151
8OO0|1|1|U|2152
8OO0|1|1|U|2153
*
8OO0|1|1|A|2280
8OO0|1|1|U|2281
8OO0|1|1|U|2282
8OO0|1|1|A|2283
8OO0|1|1|A|2284
8OO0|1|1|C|2285
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Ln
- 60S ribosomal protein L41-A
- Chain Lp
- 60S ribosomal protein L43-like protein
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