J4_8OVE_002
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUU(A2M)AAGGG*CCAAAG*CUGCAAACCAUG*CUC
- Length
- 30 nucleotides
- Bulged bases
- 8OVE|1|AA|A2M|721, 8OVE|1|AA|G|725, 8OVE|1|AA|A|1303, 8OVE|1|AA|C|1305, 8OVE|1|AA|A|1307
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|AA|G|718
8OVE|1|AA|U|719
8OVE|1|AA|U|720
8OVE|1|AA|A2M|721
8OVE|1|AA|A|722
8OVE|1|AA|A|723
8OVE|1|AA|G|724
8OVE|1|AA|G|725
8OVE|1|AA|G|726
*
8OVE|1|AA|C|1252
8OVE|1|AA|C|1253
8OVE|1|AA|A|1254
8OVE|1|AA|A|1255
8OVE|1|AA|A|1256
8OVE|1|AA|G|1257
*
8OVE|1|AA|C|1298
8OVE|1|AA|U|1299
8OVE|1|AA|G|1300
8OVE|1|AA|C|1301
8OVE|1|AA|A|1302
8OVE|1|AA|A|1303
8OVE|1|AA|A|1304
8OVE|1|AA|C|1305
8OVE|1|AA|C|1306
8OVE|1|AA|A|1307
8OVE|1|AA|U|1308
8OVE|1|AA|G|1309
*
8OVE|1|AA|C|1508
8OVE|1|AA|U|1509
8OVE|1|AA|C|1510
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain AE
- 40S ribosomal proteins S11, putative
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AH
- 40S ribosomal protein S14
- Chain AJ
- 40S ribosomal protein S15a, putative
- Chain AS
- 40S ribosomal protein S23, putative
- Chain AV
- 40S ribosomal protein S26
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bz
- Ribosomal protein L41
Coloring options: