J4_8OVE_004
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAU*AGCC*GAAG*CAUUAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_004 not in the Motif Atlas
- Homologous match to J4_8C3A_002
- Geometric discrepancy: 0.516
- The information below is about J4_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|G|199
8OVE|1|BA|G|200
8OVE|1|BA|A|201
8OVE|1|BA|A|202
8OVE|1|BA|U|203
*
8OVE|1|BA|A|261
8OVE|1|BA|G|262
8OVE|1|BA|C|263
8OVE|1|BA|C|264
*
8OVE|1|BA|G|268
8OVE|1|BA|A|269
8OVE|1|BA|A|270
8OVE|1|BA|G|271
*
8OVE|1|BA|C|281
8OVE|1|BA|A|282
8OVE|1|BA|U|283
8OVE|1|BA|U|284
8OVE|1|BA|A|285
8OVE|1|BA|C|286
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Bc
- 60S ribosomal protein L28, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: