J4_8OVE_007
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAAA(A2M)UAG*UG*UG(OMC)UUACGGCGG*CUC
- Length
- 26 nucleotides
- Bulged bases
- 8OVE|1|BB|G|385
- QA status
- Modified nucleotides: A2M, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BB|G|90
8OVE|1|BB|C|91
8OVE|1|BB|A|92
8OVE|1|BB|A|93
8OVE|1|BB|A|94
8OVE|1|BB|A2M|95
8OVE|1|BB|U|96
8OVE|1|BB|A|97
8OVE|1|BB|G|98
*
8OVE|1|BB|U|122
8OVE|1|BB|G|123
*
8OVE|1|BB|U|375
8OVE|1|BB|G|376
8OVE|1|BB|OMC|377
8OVE|1|BB|U|378
8OVE|1|BB|U|379
8OVE|1|BB|A|380
8OVE|1|BB|C|381
8OVE|1|BB|G|382
8OVE|1|BB|G|383
8OVE|1|BB|C|384
8OVE|1|BB|G|385
8OVE|1|BB|G|386
*
8OVE|1|BB|C|595
8OVE|1|BB|U|596
8OVE|1|BB|C|597
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- SrRNA 4
- Chain BT
- 60S ribosomal protein L19, putative
- Chain BW
- 60S ribosomal protein L23, putative
- Chain BY
- Ribosomal protein L24
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
Coloring options: