J4_8OVE_008
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AACUG*CAUAG*UGAUU*AUUAAU
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0732
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BB|A|394
8OVE|1|BB|A|395
8OVE|1|BB|C|396
8OVE|1|BB|U|397
8OVE|1|BB|G|398
*
8OVE|1|BB|C|410
8OVE|1|BB|A|411
8OVE|1|BB|U|412
8OVE|1|BB|A|413
8OVE|1|BB|G|414
*
8OVE|1|BB|U|450
8OVE|1|BB|G|451
8OVE|1|BB|A|452
8OVE|1|BB|U|453
8OVE|1|BB|U|454
*
8OVE|1|BB|A|581
8OVE|1|BB|U|582
8OVE|1|BB|U|583
8OVE|1|BB|A|584
8OVE|1|BB|A|585
8OVE|1|BB|U|586
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- SrRNA 1
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bo
- 60S ribosomal protein L37a, putative
- Chain Bz
- Ribosomal protein L41
Coloring options: