J4_8OVE_009

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

8OVE|1|BB|OMU|578

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OVE_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0832

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|BB|C|456
8OVE|1|BB|U|457
8OVE|1|BB|G|458
*
8OVE|1|BB|C|512
8OVE|1|BB|G|513
*
8OVE|1|BB|C|531
8OVE|1|BB|U|532
8OVE|1|BB|U|533
8OVE|1|BB|A|534
8OVE|1|BB|A|535
8OVE|1|BB|G|536
8OVE|1|BB|G|537
8OVE|1|BB|U|538
8OVE|1|BB|A|539
8OVE|1|BB|G|540
*
8OVE|1|BB|U|574
8OVE|1|BB|G|575
8OVE|1|BB|A|576
8OVE|1|BB|A|577
8OVE|1|BB|OMU|578
8OVE|1|BB|G|579

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Be

60S ribosomal protein L2, putative

Chain Bz

Ribosomal protein L41