J4_8P16_012

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8P16|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P16_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2458

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P16|1|2|G|115
8P16|1|2|A|116
8P16|1|2|G|117
8P16|1|2|U|118
8P16|1|2|A|119
8P16|1|2|A|120
8P16|1|2|U|121
8P16|1|2|G|122
*
8P16|1|2|U|239
8P16|1|2|G|240
*
8P16|1|2|C|286
8P16|1|2|U|287
8P16|1|2|A|288
8P16|1|2|G|289
*
8P16|1|2|C|311
8P16|1|2|C|312

Current chains

Chain 2

16S rRNA

Nearby chains

Chain u

Small ribosomal subunit protein bS16

Chain v

Small ribosomal subunit protein uS17