J4_8P16_013

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8P16|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P16_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1514

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P16|1|2|G|142
8P16|1|2|A|143
8P16|1|2|G|144
*
8P16|1|2|C|178
8P16|1|2|A|179
8P16|1|2|U|180
8P16|1|2|A|181
8P16|1|2|A|182
8P16|1|2|C|183
8P16|1|2|G|184
*
8P16|1|2|C|193
8P16|1|2|C|194
8P16|1|2|A|195
8P16|1|2|A|196
8P16|1|2|A|197
8P16|1|2|G|198
*
8P16|1|2|U|219
8P16|1|2|G|220
8P16|1|2|C|221

Current chains

Chain 2

16S rRNA

Nearby chains

Chain y

Small ribosomal subunit protein bS20