J4_8P17_001

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8P17|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P17_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1574

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8P17|1|1|C|268
8P17|1|1|C|269
*
8P17|1|1|G|370
8P17|1|1|A|371
8P17|1|1|G|372
8P17|1|1|U|373
8P17|1|1|A|374
8P17|1|1|G|375
*
8P17|1|1|U|399
8P17|1|1|G|400
8P17|1|1|A|401
8P17|1|1|A|402
8P17|1|1|U|403
8P17|1|1|A|404
8P17|1|1|U|405
8P17|1|1|G|406
*
8P17|1|1|C|421
8P17|1|1|A|422
8P17|1|1|A|423
8P17|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28