J4_8P17_006

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8P17|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P17_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0569

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8P17|1|1|U|1313
8P17|1|1|C|1314
*
8P17|1|1|G|1338
8P17|1|1|G|1339
8P17|1|1|U|1340
8P17|1|1|G|1341
8P17|1|1|A|1342
8P17|1|1|G|1343
*
8P17|1|1|C|1404
8P17|1|1|U|1405
*
8P17|1|1|A|1597
8P17|1|1|A|1598
8P17|1|1|U|1599
8P17|1|1|C|1600
8P17|1|1|G|1601
8P17|1|1|U|1602
8P17|1|1|A|1603

Current chains

Chain 1

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23