J4_8P17_013

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8P17|1|2|C|183, 8P17|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P17_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1484

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P17|1|2|G|142
8P17|1|2|A|143
8P17|1|2|G|144
*
8P17|1|2|C|178
8P17|1|2|A|179
8P17|1|2|U|180
8P17|1|2|A|181
8P17|1|2|A|182
8P17|1|2|C|183
8P17|1|2|G|184
*
8P17|1|2|C|193
8P17|1|2|C|194
8P17|1|2|A|195
8P17|1|2|A|196
8P17|1|2|A|197
8P17|1|2|G|198
*
8P17|1|2|U|219
8P17|1|2|G|220
8P17|1|2|C|221

Current chains

Chain 2

16S RNA

Nearby chains

Chain y

Small ribosomal subunit protein bS20