J4_8P18_012

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8P18|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P18_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2425

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P18|1|2|G|115
8P18|1|2|A|116
8P18|1|2|G|117
8P18|1|2|U|118
8P18|1|2|A|119
8P18|1|2|A|120
8P18|1|2|U|121
8P18|1|2|G|122
*
8P18|1|2|U|239
8P18|1|2|G|240
*
8P18|1|2|C|286
8P18|1|2|U|287
8P18|1|2|A|288
8P18|1|2|G|289
*
8P18|1|2|C|311
8P18|1|2|C|312

Current chains

Chain 2

16S rRNA

Nearby chains

Chain u

Small ribosomal subunit protein bS16

Chain v

Small ribosomal subunit protein uS17