J4_8P2F_011

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2F_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1805

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8P2F|1|A|G|2670
8P2F|1|A|A|2671
8P2F|1|A|G|2672
8P2F|1|A|C|2673
*
8P2F|1|A|G|2701
8P2F|1|A|A|2702
8P2F|1|A|C|2703
*
8P2F|1|A|G|2758
8P2F|1|A|G|2759
8P2F|1|A|A|2760
8P2F|1|A|C|2761
8P2F|1|A|G|2762
*
8P2F|1|A|C|2796
8P2F|1|A|C|2797
8P2F|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14