J4_8P2G_001

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8P2G|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2G_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1048

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8P2G|1|A|C|271
8P2G|1|A|C|272
*
8P2G|1|A|G|416
8P2G|1|A|A|417
8P2G|1|A|G|418
8P2G|1|A|U|419
8P2G|1|A|A|420
8P2G|1|A|C|421
*
8P2G|1|A|G|445
8P2G|1|A|G|446
8P2G|1|A|A|447
8P2G|1|A|A|448
8P2G|1|A|U|449
8P2G|1|A|C|450
8P2G|1|A|U|451
8P2G|1|A|G|452
*
8P2G|1|A|U|467
8P2G|1|A|A|468
8P2G|1|A|A|469
8P2G|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28