J4_8P2G_005

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8P2G|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2G_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.072

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P2G|1|A|G|1347
8P2G|1|A|U|1348
8P2G|1|A|U|1349
8P2G|1|A|U|1350
8P2G|1|A|C|1351
*
8P2G|1|A|G|1375
8P2G|1|A|G|1376
8P2G|1|A|U|1377
8P2G|1|A|U|1378
8P2G|1|A|A|1379
8P2G|1|A|G|1380
*
8P2G|1|A|C|1441
8P2G|1|A|C|1442
*
8P2G|1|A|G|1641
8P2G|1|A|C|1642
8P2G|1|A|C|1643
8P2G|1|A|C|1644
8P2G|1|A|G|1645
8P2G|1|A|U|1646
8P2G|1|A|A|1647
8P2G|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23