J4_8P2K_016
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUA(A2M)*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8P2K|1|B5|A|4335, 8P2K|1|B5|U|4423
- QA status
- Modified nucleotides: A2M, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P2K_016 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0812
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P2K|1|B5|G|4333
8P2K|1|B5|U|4334
8P2K|1|B5|A|4335
8P2K|1|B5|A2M|4336
*
8P2K|1|B5|OMU|4366
8P2K|1|B5|C|4367
*
8P2K|1|B5|G|4422
8P2K|1|B5|U|4423
8P2K|1|B5|G|4424
*
8P2K|1|B5|C|4458
8P2K|1|B5|G|4459
8P2K|1|B5|C|4460
8P2K|1|B5|C|4461
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BO
- 60S ribosomal protein L13a
- Chain BV
- Ribosomal protein L23
Coloring options: